PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON41337.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 454aa MW: 49647.1 Da PI: 5.3617

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON41337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed++lv +++q G g W+t +++ g+ R++k+c++rw +yl PON41337.1 14 KGSWTTQEDQKLVAYITQNGEGGWRTLPQKAGLLRCGKSCRLRWTNYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	48.9	1.5e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ eE+e +v+++ G++ W+tIa+ ++ +Rt++++k++w+ PON41337.1 67 RGNFSHEEEETIVRLHSVIGNK-WSTIAKQLP-RRTDNEIKNHWH 109 89******************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MGRAPCCNGQ GLKKGSWTTQ EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY 60 LKPGIKRGNF SHEEEETIVR LHSVIGNKWS TIAKQLPRRT DNEIKNHWHA RLRRLVAEMG 120 IDHFLTGTNI ESHVAEYDIE NNAETEESRK KKLKAIESEG SVSTSFHLLN EEASKFKASG 180 TPASLIAQQI EESKSTEEGS SVSSPTTITT NLLNMVATNL NSPTSNSLGS NKTIFSKSLE 240 VSTTSGSNAN STVSELGAII GNSSDVGSPH SEYSVQVVST PASSSARLLN KMASKFALMN 300 RLKAMLCDKK QPIVSGTSID DCTRSGSDGG TGLFEDSKPD CFHFDGVLGT CRGETCNQLD 360 LAIELDHHDQ ALPVEVTDDQ RERAKIKDGT FDKESRSFSN GIDLEEQVSV LNNTGSNSYD 420 GSSPVEVMVT DLEAANNWRD YIYFDEFLDA ASLD

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MGRAPCCNGQ GLKKGSWTTQ EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY  60
LKPGIKRGNF SHEEEETIVR LHSVIGNKWS TIAKQLPRRT DNEIKNHWHA RLRRLVAEMG  120
IDHFLTGTNI ESHVAEYDIE NNAETEESRK KKLKAIESEG SVSTSFHLLN EEASKFKASG  180
TPASLIAQQI EESKSTEEGS SVSSPTTITT NLLNMVATNL NSPTSNSLGS NKTIFSKSLE  240
VSTTSGSNAN STVSELGAII GNSSDVGSPH SEYSVQVVST PASSSARLLN KMASKFALMN  300
RLKAMLCDKK QPIVSGTSID DCTRSGSDGG TGLFEDSKPD CFHFDGVLGT CRGETCNQLD  360
LAIELDHHDQ ALPVEVTDDQ RERAKIKDGT FDKESRSFSN GIDLEEQVSV LNNTGSNSYD  420
GSSPVEVMVT DLEAANNWRD YIYFDEFLDA ASLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	177	RKKKLKAIESEGSVSTSFHLLNEEASKFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61420.2	1e-61	MYB family protein