PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON41689.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23255.6 Da    PI: 10.3416
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON41689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.3e-241764249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + e ksn+qvtfskRr g++KKA ELS+LC+ +vavi+fs++gkl+ +
  PON41689.1 17 KLEKKSNKQVTFSKRRSGLFKKAGELSILCGSDVAVIVFSPNGKLFCF 64
                6799*****************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MDVRKRTQGR QKIEIKKLEK KSNKQVTFSK RRSGLFKKAG ELSILCGSDV AVIVFSPNGK  60
LFCFGHPSVD AVISHFRNGT STTASYPSTT NSESSAVQAA TQEYNLRTYV EATKELEAEK  120
KRAAEARLAS FLKKELGMSN GSNGGWWWDK PVEGMTLEEM ERHLGELYEL KKKVSTHAQG  180
LRMGKVGPPQ PLALFRGAGG PLGFGFENAL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29M-type_MADS family protein