PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON41858.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family LBD
Protein Properties Length: 256aa    MW: 27676.1 Da    PI: 8.229
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON41858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42471461100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++l+ael+++++
  PON41858.1  47 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHKVFGASNVSKMLMELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQTLQAELNAVRT 145
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 e
  PON41858.1 146 E 146
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MSRDREGLDE IGKRIRADAP NNTNSDQIMG RRVQSFGPPG TLNTITPCAA CKLLRRRCAE  60
ECPFSPYFSP QEPQKFAAVH KVFGASNVSK MLMELPESQR ADAANSLVYE ANLRLRDPVY  120
GCMGLISALQ QQIQTLQAEL NAVRTEILRY KYREATSHHI ISSSTTTTST AHHQAGLANL  180
VSPHVHHGVV SIASLPVPQA ISHSQPPAPP PPPPPPPPSI VVSSSSTTSS TSSLYTPSTN  240
TTGYSSISSD NVPYFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.16e-78LBD family protein