PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON41964.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family LBD
Protein Properties Length: 246aa    MW: 27354.3 Da    PI: 8.5481
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON41964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.71.2e-3523121198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++r+kC ++C+lapyfpae++++f++vhk+FG+snv+k++k++ ++e+r++a++slv+eA ++++dPv G +g ++k+  +l+  k++++++ 
  PON41964.1  23 ACAACKHQRKKCHEGCILAPYFPAERSRDFQAVHKVFGVSNVTKIVKNIvDDEDRRKAVDSLVWEASCWQKDPVLGPYGEYRKVYDELKIYKNQVNQRS 121
                 7***********************************************967777**************************************9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MQRNTSTTTT KVGGATAGSS QPACAACKHQ RKKCHEGCIL APYFPAERSR DFQAVHKVFG  60
VSNVTKIVKN IVDDEDRRKA VDSLVWEASC WQKDPVLGPY GEYRKVYDEL KIYKNQVNQR  120
SASAYKSLSG LVGWNSPNGN INGHNGMVNG VVNSNSLSYN FHDNGNAMED QSPFCVYTSS  180
YGQNTIPEKI RQEKNNVDHS VVPVVLQQNQ QQYSINGLNQ QYYLSGQFNQ VNTSKTIEST  240
LWDGGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-41LBD family protein