PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42045.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 280aa MW: 31379.6 Da PI: 5.1772

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.4e-19	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l ++v +G g+W+t ar+ g++Rt+k+c++rw++yl PON42045.1 30 KGPWTVEEDSMLFNYVSIHGEGRWNTLARHAGLKRTGKSCRLRWLNYL 77 79********************************************97 PP
2	Myb_DNA-binding	48.7	1.8e-15	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PON42045.1 83 RGNITLQEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 126 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MDISPVGDQL YGSVISTQQI SEEDQADLRK GPWTVEEDSM LFNYVSIHGE GRWNTLARHA 60 GLKRTGKSCR LRWLNYLRPS VRRGNITLQE QLLILELHSR WGNRWSKIAQ YLPGRTDNEI 120 KNYWRTRVQK QAKQLKCDVN SKQFQDAMRY VWIPRLIERI QAGRSDLSPA AQPATGSSDL 180 GGVGPWGSNL VDPNSRPDMS GTSSDTSEAQ LSSVSDLTDY ANPNPSGGSP AENGSGTSYQ 240 YGYGADIQGY GQNDNWLSGG DSLENWWSEE DLRFLETALQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	9e-78	MYB family protein