PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON42151.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37716.5 Da    PI: 9.5775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON42151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.2e-191151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n+  r++tf kR+ngi+KKA+E S+LCd++++v i +++
  PON42151.1 11 IANEKSRKTTFQKRKNGIMKKAFEFSILCDTDICVFISGPK 51
                899**********************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MGRGKLKLEL IANEKSRKTT FQKRKNGIMK KAFEFSILCD TDICVFISGP KTDSGHAQTR  60
TPREGKEEAD IETFPPENDR VLRIIQKYQQ AVLQRPPNKS YNLTGLLAER NRKVHSDISR  120
FRKKFYAFKY PTSAELIDGL AADELAELVG RLDGKIRVVK QIIEEEKKKE SALKNVFKNN  180
HHDYYDQMVD MNKTPSLQTD SSFSVTNPNS MMSLLLGDDN QTSMGLASSF DDHHDHHHHH  240
HHPRAKNYFN GMSSNNTRQY GTTNVTSAFR GPVYDDLTAG VLPENTMHYS TVTTASLRPV  300
YNHPTARMAL EKYMMMLNGS GAAGTASSSM QTHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-17M-type_MADS family protein