PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON42176.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 222aa    MW: 24127.3 Da    PI: 8.8236
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON42176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.4e-40241241100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ sl+yeA+ar+rdPvyG+v++i++lq+q+ +l+aela+++
  PON42176.1  24 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVSLCYEARARIRDPVYGCVAHIFNLQHQVVNLQAELAYVQ 122
                 7***********************9989*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  PON42176.1 123 AR 124
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MMNINGGSSF GSSGTGGGGG SSGPCGACKF LRRKCVKGCI FAPYFDSEQG TAHFAAVHKV  60
FGASNASKLL LRIPPHKRLD AVVSLCYEAR ARIRDPVYGC VAHIFNLQHQ VVNLQAELAY  120
VQARLSTLQR LPPALLPPQS QSPSLTTNHI LQSSPDVISA SNSSMHSDPL LHHQQASTEL  180
TSFYANPIDH QPIHDEDLHE LVRQFVSRYF PAGLRLRSST SH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-63LBD family protein