PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42361.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

LBD

Protein Properties

Length: 186aa MW: 21421.6 Da PI: 5.9315

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.2	1.6e-20	17	65	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaC++lrrkC ++Cvl+pyfp+++ +kf vhk+FGasnv+k+++++ PON42361.1 17 PCAACRMLRRKCDRNCVLSPYFPSDEIEKFVGVHKVFGASNVIKMIQDT 65 7*********************************************975 PP
2	DUF260	48.7	2.1e-15	77	133	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + + ++ee+r+d+++++vyeA+ar+rdP+yG++g+i++lq+ +++l+++l+++ ++ PON42361.1 77 TYDQMVEEEKRDDTVQAIVYEAKARLRDPIYGSAGTIFHLQRMVNELRSQLESTTAQ 133 455678999******************************************998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MELTGQVPLP RSRVHQPCAA CRMLRRKCDR NCVLSPYFPS DEIEKFVGVH KVFGASNVIK 60 MIQDTVVLIS SYINLNTYDQ MVEEEKRDDT VQAIVYEAKA RLRDPIYGSA GTIFHLQRMV 120 NELRSQLEST TAQVMELQEQ RDRLLGILMN VHYLEFDTLP TMQHVDPLFY GSNSIHDIDP 180 PVSFFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-41	LBD family protein