PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42588.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 628aa MW: 72017.6 Da PI: 6.3454

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.7	1e-30	434	520	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 rW+++ev aLi++r+++e ++++ lk+p+Weevs+ m++ g++rs+k+Ckekwen+nk+++k+k+++ + + ++s+tc+yfdql+ PON42588.1 434 RWPRSEVEALIQVRSSLELKFQEPGLKGPRWEEVSALMASMGYKRSAKRCKEKWENINKYFRKTKHSSATKgSHQNSKTCSYFDQLD 520 8***************************************************************98877699**********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MQSNYEIAEI IPEQPQFMDS DCSSPLVFPL PNPSIQNHHY PLHHHHHQDH DHHNHCLLHP 60 HQPIDQHHQY SQVLLKRQFQ YPSSSTSTPF THQFFQPWQR RVEEQETVRP NHQTQVVRAP 120 QLNFKLGLNE NSTSSINNAP FALGGGESYL LGGNQQFHHF PEKQTHFVES KSKYCRQAQE 180 YSTAKEPFWN SVAADISVLN TDNDKSSRVD VREICKELED KYRLNEELEA IHSLAKIGEV 240 NNTGSGSALT GEESPSPADV SIPAPSRDIP CDGGANVSAT HGSTDEEASI GEEASLMKKL 300 RNKKRKRKTK GLALLSSMTR FFEGLVKQVM GHQDRLHGNF MESIERIDKE RREREEVWRR 360 EEAQTHNREA IARVHEQALA SNREARIVSH IEKITGQRVN LPSRNIAPLL LKPDLVNESL 420 EESMPIDEFD TNRRWPRSEV EALIQVRSSL ELKFQEPGLK GPRWEEVSAL MASMGYKRSA 480 KRCKEKWENI NKYFRKTKHS SATKGSHQNS KTCSYFDQLD QLYSRTTPHN YDVSSSSSHC 540 SKPLLDGFGA QSQSYIELLE AFSARKDEVG VTQRTLSSGN FEIAEIGSGK LDFEGHFHEN 600 VEFEREDHDR QKLNHVEDED FEDEFDED

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MQSNYEIAEI IPEQPQFMDS DCSSPLVFPL PNPSIQNHHY PLHHHHHQDH DHHNHCLLHP  60
HQPIDQHHQY SQVLLKRQFQ YPSSSTSTPF THQFFQPWQR RVEEQETVRP NHQTQVVRAP  120
QLNFKLGLNE NSTSSINNAP FALGGGESYL LGGNQQFHHF PEKQTHFVES KSKYCRQAQE  180
YSTAKEPFWN SVAADISVLN TDNDKSSRVD VREICKELED KYRLNEELEA IHSLAKIGEV  240
NNTGSGSALT GEESPSPADV SIPAPSRDIP CDGGANVSAT HGSTDEEASI GEEASLMKKL  300
RNKKRKRKTK GLALLSSMTR FFEGLVKQVM GHQDRLHGNF MESIERIDKE RREREEVWRR  360
EEAQTHNREA IARVHEQALA SNREARIVSH IEKITGQRVN LPSRNIAPLL LKPDLVNESL  420
EESMPIDEFD TNRRWPRSEV EALIQVRSSL ELKFQEPGLK GPRWEEVSAL MASMGYKRSA  480
KRCKEKWENI NKYFRKTKHS SATKGSHQNS KTCSYFDQLD QLYSRTTPHN YDVSSSSSHC  540
SKPLLDGFGA QSQSYIELLE AFSARKDEVG VTQRTLSSGN FEIAEIGSGK LDFEGHFHEN  600
VEFEREDHDR QKLNHVEDED FEDEFDED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	308	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-34	Trihelix family protein