PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42589.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 294aa MW: 33470.1 Da PI: 5.963

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++++ +G g W+ +++ g++R++k+c++rw++yl PON42589.1 14 KGAWTALEDQILTQYINNHGEGKWRNLPKEAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.2	6.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ PON42589.1 67 RGNISEEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899****************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MGRSPCCSKE GVNKGAWTAL EDQILTQYIN NHGEGKWRNL PKEAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SEEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVKATE 120 RQQKEENDTK HRLTARASGN TPTTAIRTKA TKCTNKILVI RSNTHDPQPN RPVVVQEGHH 180 DHVDIEPSTF QNLANYDNFV ANSSNIELDF DVGELLLDQS ADLLDSELWK LPCNDAHYLD 240 NNNAGVDDYH DHHEEGIDTN KNIDGLNNNW SSSSTCQPFL FSDEIIEEWI SGND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-62	MYB family protein