PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42882.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 389aa MW: 43971.1 Da PI: 7.1537

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.2e-19	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++I++ g+ R++k+c++rw +yl PON42882.1 28 RGLWSPEEDEKLIKYITTHGHGSWSSIPKLAGLQRCGKSCRLRWINYL 75 788*******************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ PON42882.1 81 KGSFSEEEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 124 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MQVISESELD QLNRNMVHQC CSKQKVKRGL WSPEEDEKLI KYITTHGHGS WSSIPKLAGL 60 QRCGKSCRLR WINYLRPDLK KGSFSEEEER TIIDVHRILG NRWAQIAKHL PGRTDNEVKN 120 FWNSCIKKKL IAQGLDPNTH NLLNIPSSKS NNTSAKKYYI HNKTTTNFSI AQPKRSTTTT 180 TTTSISTSSV FSVNSHSNIS HTSMNIKAPI LTLPSVSPPH TYPSNPDDDH HLLQLESSIM 240 SNCTTHDHDQ YDHNPSTVCN TTFQENNPTS SSALMESTVS HHSKGKLQSS GSPLNPPGFE 300 RIEETCLWDI SSFDHRKVNE RDEILLQQKQ LEKASDEVAR SNINDGQNME YYAPLETSNF 360 DLIDFPGSTV DSGLMYCHLS PIDYVAWNC

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MQVISESELD QLNRNMVHQC CSKQKVKRGL WSPEEDEKLI KYITTHGHGS WSSIPKLAGL  60
QRCGKSCRLR WINYLRPDLK KGSFSEEEER TIIDVHRILG NRWAQIAKHL PGRTDNEVKN  120
FWNSCIKKKL IAQGLDPNTH NLLNIPSSKS NNTSAKKYYI HNKTTTNFSI AQPKRSTTTT  180
TTTSISTSSV FSVNSHSNIS HTSMNIKAPI LTLPSVSPPH TYPSNPDDDH HLLQLESSIM  240
SNCTTHDHDQ YDHNPSTVCN TTFQENNPTS SSALMESTVS HHSKGKLQSS GSPLNPPGFE  300
RIEETCLWDI SSFDHRKVNE RDEILLQQKQ LEKASDEVAR SNINDGQNME YYAPLETSNF  360
DLIDFPGSTV DSGLMYCHLS PIDYVAWNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	9e-83	MYB family protein