PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON43840.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 150aa MW: 16815.3 Da PI: 8.2833

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON43840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.6	1.4e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l +++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+ PON43840.1 13 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELLPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKS 111 7**********************************************************************************************9998 PP DUF260 100 e 100 e PON43840.1 112 E 112 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence
MASSSSSSNS NSPCAACKFL RRKCQPECVF APYFPPDQPQ KFANVHKVFG ASNVTKLLNE 60 LLPSQREDAV NSLAYEADMR LRDPVYGCVG VISLLQHQLR QLQMDLSCAK SELSNVNSER 120 VSLIGFIPVI RNLQEFVCLY PFNFSVRHTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	6e-63	LBD family protein