PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON45017.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 333aa    MW: 36933.2 Da    PI: 4.5767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON45017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16e-151856745
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                sn  v+fskRr g++ KA EL+  Cda++a++++s+tg+
  PON45017.1 18 SNVFVSFSKRRRGLFQKAAELCSKCDAQIAIVVLSPTGN 56
                5778*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MSKRSLLEYR EQVPRQPSNV FVSFSKRRRG LFQKAAELCS KCDAQIAIVV LSPTGNPFAF  60
GHPSVDEVLS HYLCQTTINP SLLTDEHKQQ KQRIEGLKHS PKLQGQISQN RENNVVVDDV  120
EGDKGVTGLR AWIEKECEER KSLQESELLK QKLLLLLNKV TKRLEESAPC STITTKTKEI  180
GIGDSSDGDD HNVLMQDDHM VSIISENNHD FVLNGCGGLI DVGPVGCSDG EGLFDELDYA  240
LMSLCNPPDD DESNMNYYCS PNDMPYHENN CVATSDYYPP NDTSYSGAVG LLGNHVLGDA  300
GICLSSNQFT CSNQLYPLND TSYGAADFFW HVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.15e-19M-type_MADS family protein