PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON45020.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 346aa    MW: 38306.4 Da    PI: 4.3405
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON45020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.4e-151755745
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                sn  v+fskRr g++ KA EL+  Cda++a++++s+tg+
  PON45020.1 17 SNVFVSFSKRRRGLFQKAAELCSKCDAQIAIVVLSPTGN 55
                5778*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MAKRSLEDRE QVPRQPSNVF VSFSKRRRGL FQKAAELCSK CDAQIAIVVL SPTGNPFAFG  60
HSSVDEVLSH YLCQTTIIPS LLTDEHKQQK QRIEGLKHSL KLQGQISQNR GNTNIDDLVD  120
EHDQDQENYK GVTDLRAWIE KECEERQSVQ ELEFLKQKLL VLLDKVAKRL ETAPYSTTAT  180
NEIGIGDSSG GGGGDNHKNE LMEDDEAHMM SIIDQNSQDF AFNGCGGLIN VGPVGCSDGE  240
GVFDDLDYAA LMNLCYNPPD DDMPNTNYYS SPNDMSYPEN NYGTTLDYHP PNDMSYSGAV  300
GFTGNHILGL GDAGICLSSD QFTCSNQLHP LNDTLYGAAD FFWPVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-18M-type_MADS family protein