PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON45452.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 325aa    MW: 35094.3 Da    PI: 10.0551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON45452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
       PON45452.1 127 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 171
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRKCSHCGN IGHNSRTCTN YRATSSTTTT FVNNANSSLR LFGVQLDIIS TSSSANSSSS  60
ISINAMKKSF SMDCLMHSLS SASSSPSSPL SSRIALDENI SDHKSASIGY LSDGLIGRVQ  120
ERKKGVPWTE EEHRTFLIGL EKLGKGDWRG ISRNYVTTRT PTQVASHAQK YFLRQASLNK  180
KKRRSSLFDM VGSGHHNTYS FKPSDDPNTP FSQPKDQNHQ DGTAVVPVLL ELSSSQSRQN  240
LMSDHNIHQK PVDCPQLAAS HHNHAVPVLL HGLFASKSMA TSSNNAAAAG PDLELKLAAG  300
PRPNSLEQNK SSTPGPLLVG PITVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-56MYB_related family protein