PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON45521.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 456aa MW: 49808.3 Da PI: 8.2915

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON45521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	51	77	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p PON45521.1 51 PGEPDCSYYIRTGLCRFGATCRFNHPP 77 5789*********************97 PP
2	zf-CCCH	31.7	2.5e-10	117	136	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++tGtCk+G++CkF+H++ PON45521.1 117 YFLKTGTCKFGATCKFHHPR 136 9*****************96 PP
3	zf-CCCH	35.8	1.4e-11	158	182	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG Ck+G++CkF+H++ PON45521.1 158 ESECAYYLRTGLCKFGNTCKFHHPQ 182 679********************97 PP
4	zf-CCCH	38.6	1.8e-12	316	342	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ PON45521.1 316 PGQPECQFYMKTGDCKFGAVCKFHHPR 342 5789*********************96 PP
5	zf-CCCH	40.1	6.1e-13	362	388	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ PON45521.1 362 PGEPLCIFYSRYGICKFGPSCKFDHPM 388 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEFDAEIPMS SLTAVTEAAP SLSPSFSQDA LWQMNLRSSE TMESGTYPER PGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIMFSHI PSINGSYFLK 120 TGTCKFGATC KFHHPRDKAG LAGRVSLNIL GYPLRPNESE CAYYLRTGLC KFGNTCKFHH 180 PQPTNMMVSM RGSPVYPTVQ SPTTPGQQSY LGGITNWSRA SFIPSPRWQG SSSYAPLILP 240 QGMVSVPSWN TYSGQLGSVP SSESQPAAGS SQIYGTSRQS DQANTGSQGT FLPYRSGSVP 300 VGFYALQREN VFPERPGQPE CQFYMKTGDC KFGAVCKFHH PRERLIPAPD CLLSPMGLPL 360 RPGEPLCIFY SRYGICKFGP SCKFDHPMGI FTYNLSASSS PDVPVRRLLG SSSGTAQLNL 420 SSEGLVEAGS TNPRRLSLSE TRQMPSGDDS NSDTEG

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEFDAEIPMS SLTAVTEAAP SLSPSFSQDA LWQMNLRSSE TMESGTYPER PGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIMFSHI PSINGSYFLK  120
TGTCKFGATC KFHHPRDKAG LAGRVSLNIL GYPLRPNESE CAYYLRTGLC KFGNTCKFHH  180
PQPTNMMVSM RGSPVYPTVQ SPTTPGQQSY LGGITNWSRA SFIPSPRWQG SSSYAPLILP  240
QGMVSVPSWN TYSGQLGSVP SSESQPAAGS SQIYGTSRQS DQANTGSQGT FLPYRSGSVP  300
VGFYALQREN VFPERPGQPE CQFYMKTGDC KFGAVCKFHH PRERLIPAPD CLLSPMGLPL  360
RPGEPLCIFY SRYGICKFGP SCKFDHPMGI FTYNLSASSS PDVPVRRLLG SSSGTAQLNL  420
SSEGLVEAGS TNPRRLSLSE TRQMPSGDDS NSDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein