PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON45650.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 534aa MW: 57893.6 Da PI: 5.238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON45650.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.9	3.5e-13	190	212	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tGtCk+G++CkF+H+ PON45650.1 190 EDCSFYLKTGTCKFGSNCKFNHP 212 89********************9 PP
2	zf-CCCH	27.1	7.3e-09	236	259	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ +C++++r+G Ck+G Ck++H PON45650.1 236 GQTECKYYLRSGGCKFGKACKYNH 259 6789******************** PP
3	zf-CCCH	40.7	4e-13	286	309	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG CkyG++C+F+H+ PON45650.1 286 EKECPYYMRTGSCKYGANCRFNHP 309 679********************9 PP
4	zf-CCCH	26.7	9.6e-09	421	447	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ PON45650.1 421 PGQPECNYFLKTGDCKFKSNCKYHHPK 447 5789*********************96 PP
5	zf-CCCH	31.8	2.5e-10	469	492	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++++r+G+Ck+G+ Ck+ H+ PON45650.1 469 QNVCSHYSRYGICKFGPACKYDHP 492 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MEHSEQIFVT QNDAVLGFQH SPSPSSSSSS SSSSVNGDIP DPATSDLSRG AAEESGCDPL 60 HEELGNLVLK DEKEEDPVRK WDLDPEEKEE EKVFEKELSG GEIGSRNGSE DENENGKGKE 120 VEEGSDGGGG DGVEGEWEGW EENKNGNESE NGNEVNNGLG GGGGVEVEKK NGLGGGGTRK 180 YQYPVRPEAE DCSFYLKTGT CKFGSNCKFN HPVRRKPNQG AKEKVKEREE SLEKPGQTEC 240 KYYLRSGGCK FGKACKYNHT RGKTSVAALA PALELNFVGL PIRVGEKECP YYMRTGSCKY 300 GANCRFNHPD PTDAAGGDTS AGYGNSGPAS LQGASQSTIP SWSSPRSLNE TAPFVPLMLS 360 PTQGVPSQNP EWNGYQAPVF LPERNLLPPP PAFVMNNPVT ETNIYSHHPP QKQVEEYPER 420 PGQPECNYFL KTGDCKFKSN CKYHHPKRTA TGAPPTVLSD KGLPLRPDQN VCSHYSRYGI 480 CKFGPACKYD HPAQPTSSLS GVENQPRYGN SVATAEGAGL TRRSRSETTI LQLV

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MEHSEQIFVT QNDAVLGFQH SPSPSSSSSS SSSSVNGDIP DPATSDLSRG AAEESGCDPL  60
HEELGNLVLK DEKEEDPVRK WDLDPEEKEE EKVFEKELSG GEIGSRNGSE DENENGKGKE  120
VEEGSDGGGG DGVEGEWEGW EENKNGNESE NGNEVNNGLG GGGGVEVEKK NGLGGGGTRK  180
YQYPVRPEAE DCSFYLKTGT CKFGSNCKFN HPVRRKPNQG AKEKVKEREE SLEKPGQTEC  240
KYYLRSGGCK FGKACKYNHT RGKTSVAALA PALELNFVGL PIRVGEKECP YYMRTGSCKY  300
GANCRFNHPD PTDAAGGDTS AGYGNSGPAS LQGASQSTIP SWSSPRSLNE TAPFVPLMLS  360
PTQGVPSQNP EWNGYQAPVF LPERNLLPPP PAFVMNNPVT ETNIYSHHPP QKQVEEYPER  420
PGQPECNYFL KTGDCKFKSN CKYHHPKRTA TGAPPTVLSD KGLPLRPDQN VCSHYSRYGI  480
CKFGPACKYD HPAQPTSSLS GVENQPRYGN SVATAEGAGL TRRSRSETTI LQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-136	C3H family protein