PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON45680.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

TCP

Protein Properties

Length: 601aa MW: 65230.1 Da PI: 10.5054

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON45680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.2	7.1e-35	206	301	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........k 89 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++++ ++ +++a++ ++++++ + + PON45680.1 206 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPAWNPISSSAVAVAAAVKQPGVNenapavdaA 301 79**************************************************************54444333333333333322222222233220 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MAEEPFGKRR GKRRSNTIRS QKRGSFRIRT SSSRSKKKRR SEEESKPERV LKKSQLKPIT 60 TTTTTSTKTK CPPLKAGRRD KAEPESGSSR ESSPLPSSSL PQPNPKPKPE LEPESLSYFQ 120 NLETQQAPKK QRSLHSFPSS SNLSEQRTEY ARKMGESHHH QQHHHHHHQN RATTPTTSSR 180 MGMRGVAGVG GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ 240 DRLGYDRPSK AVDWLIKKAK AAIDELDELP AWNPISSSAV AVAAAVKQPG VNENAPAVDA 300 AAAIASGSHR APSTTTGMVG DGRVSDCSGG LNLQSHMVDN PNNNTGGGGG SGFLPPSLDS 360 DAIADTIKSF FPDHPHPPPS SIQFHQSFPA DLLSRTSSQS QDLRLSLQSF QDPILLHHHH 420 QAQAQAQAHQ NDQTLFSGTG FIGSSSAGWS DHHQSPAEIS RLQRIVAWNG GVSGNGGNDG 480 SGGFIFNSLP VAPAPSPSPP LQPFFGRNQF FNQRGPLQSS SMPSVRAWID PSSLSMADHH 540 ISHAINHHHQ HQHHNQPSMS AMGFISGGFS PGFHIPARIQ GEEEHDGISE KPSSASSDSR 600 H

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MAEEPFGKRR GKRRSNTIRS QKRGSFRIRT SSSRSKKKRR SEEESKPERV LKKSQLKPIT  60
TTTTTSTKTK CPPLKAGRRD KAEPESGSSR ESSPLPSSSL PQPNPKPKPE LEPESLSYFQ  120
NLETQQAPKK QRSLHSFPSS SNLSEQRTEY ARKMGESHHH QQHHHHHHQN RATTPTTSSR  180
MGMRGVAGVG GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ  240
DRLGYDRPSK AVDWLIKKAK AAIDELDELP AWNPISSSAV AVAAAVKQPG VNENAPAVDA  300
AAAIASGSHR APSTTTGMVG DGRVSDCSGG LNLQSHMVDN PNNNTGGGGG SGFLPPSLDS  360
DAIADTIKSF FPDHPHPPPS SIQFHQSFPA DLLSRTSSQS QDLRLSLQSF QDPILLHHHH  420
QAQAQAQAHQ NDQTLFSGTG FIGSSSAGWS DHHQSPAEIS RLQRIVAWNG GVSGNGGNDG  480
SGGFIFNSLP VAPAPSPSPP LQPFFGRNQF FNQRGPLQSS SMPSVRAWID PSSLSMADHH  540
ISHAINHHHQ HQHHNQPSMS AMGFISGGFS PGFHIPARIQ GEEEHDGISE KPSSASSDSR  600
H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	40	KKKRR
2	36	57	KKKRRSEEESKPERVLKKSQLK
3	37	58	KKKRRSEEESKPERVLKKSQLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	6e-63	TCP family protein