PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON47119.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 254aa    MW: 27563.7 Da    PI: 6.789
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON47119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.1e-39491501101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l++ela+++
  PON47119.1  49 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGCVSTILALQQQVASLQSELAMVQ 147
                 7***********************9989**********************************************************************9 PP

      DUF260  99 eel 101
                 ++l
  PON47119.1 148 NQL 150
                 986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MSDVPHGEDH STGAFENRRN KTTAKRTTVA PPDQLESTAA TAAPVPPAPC GACKFLRRKC  60
ISGCIFAPHF GSDQGAARFA AVHKVFGASN VSKLLLHIPV NRRHDAVVTI SYEAQARLAD  120
PVYGCVSTIL ALQQQVASLQ SELAMVQNQL MNSRFAFANA LQSSQQQQHP QQLQQHTVGV  180
LQPAYSNNSS ASNNLINMTS FTSNFDLAAA TADTTPSSHS LEPLQLSRPS HDEEDDEEES  240
RIPHVYPNEI IHRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-60LBD family protein