PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON47821.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27905.7 Da    PI: 9.9105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON47821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.6e-131150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n+  r+ tf kR++ + KK +ELS+LC+++++ ii s+
  PON47821.1 11 ICNDWARKSTFKKRKKSLVKKLSELSTLCGIDACAIIRSP 50
                679999*******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MTRKKLNLAY ICNDWARKST FKKRKKSLVK KLSELSTLCG IDACAIIRSP YEAEPEALPS  60
AAGVQRVVAK FRKMPEMEQS KNMVNQQGFL SQRISKTSDQ LKRLRNNNRE WELRQVISQS  120
LAGNYMRLES FNAMDLNDLR WLIDSDLKDI HKGIINNKMS SQMAAAPVAV AVDGGHTRGR  180
ESANAVAVAA EVMNLENSGM QRQQWSMDSM NNPQDHGHNH AQHMGFGGDE MNFPFGDNNQ  240
WSNGFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKLNLAYICNDWARKSTFKKRK
21732RKSTFKKRKKSLVKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-39M-type_MADS family protein