PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48010.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 351aa MW: 38742.5 Da PI: 7.7254

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y ++C+FaH+ PON48010.1 91 FKTKLCCKFRT-GTCPYISNCNFAHS 115 69*******.***********8 PP
2	zf-CCCH	18.7	3.2e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ PON48010.1 165 YKGRHCKKFYTEEGCPYGDSCTFLHD 190 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	230	255	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PON48010.1 230 WKTRICNKWELTGYCPFGSKCHFAHG 255 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEYGRESVVQ VIGGSGGGSE NWSGDQAIWA TEDDYRAWNN SETSGDTFSN SNYDQRQSQT 60 RSGSEPPSKK SKNSQDVTSS NRSKAIGKMF FKTKLCCKFR TGTCPYISNC NFAHSIEELR 120 RPPPNWQQIV AAHEEEKAVS SEQREEFQIP SVGSSSFVVE TPRSYKGRHC KKFYTEEGCP 180 YGDSCTFLHD EQSKNRESVA ISLGPGGYGG APSGANNNNN NNSNNKPSNW KTRICNKWEL 240 TGYCPFGSKC HFAHGSTELH RYGGGLVETD ARDATSVPTE TKQQGGVPPK APADTLVASV 300 PSVPHSDVYH MGVPSQRSSI VLQRPGHRAH QKWKGPDKIS RIYGDWIDDV E

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEYGRESVVQ VIGGSGGGSE NWSGDQAIWA TEDDYRAWNN SETSGDTFSN SNYDQRQSQT  60
RSGSEPPSKK SKNSQDVTSS NRSKAIGKMF FKTKLCCKFR TGTCPYISNC NFAHSIEELR  120
RPPPNWQQIV AAHEEEKAVS SEQREEFQIP SVGSSSFVVE TPRSYKGRHC KKFYTEEGCP  180
YGDSCTFLHD EQSKNRESVA ISLGPGGYGG APSGANNNNN NNSNNKPSNW KTRICNKWEL  240
TGYCPFGSKC HFAHGSTELH RYGGGLVETD ARDATSVPTE TKQQGGVPPK APADTLVASV  300
PSVPHSDVYH MGVPSQRSSI VLQRPGHRAH QKWKGPDKIS RIYGDWIDDV E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-126	C3H family protein