PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON48065.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YA
Protein Properties Length: 245aa    MW: 26613 Da    PI: 9.8635
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON48065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-3286142158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq+Rak+e+++kl +k+rkpylheSRh hAl+R RgsgGrF
  PON48065.1  86 DGPIYVNAKQYHGILRRRQSRAKQEAQNKL-IKNRKPYLHESRHLHALNRVRGSGGRF 142
                 57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MISSESGEDA MSSEGAEDQM KPMFLLSNTD FILNPSQVSC SHSMAGVPYP YADPYFGGLL  60
TSYGPQALMV GIPPARVPLP LDLADDGPIY VNAKQYHGIL RRRQSRAKQE AQNKLIKNRK  120
PYLHESRHLH ALNRVRGSGG RFLSKKQLQH QSPDSTSATT AASGSSRCAS GSMKMTQKKD  180
TIELESPRSG FPEYVTMVTS RSDTTTVSDN TGRRFPGAAS HVGKAMQCSG RLLHGGNQHC  240
ASVVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.29e-44NF-YA family protein