PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON48180.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YB
Protein Properties Length: 151aa    MW: 17082.9 Da    PI: 4.916
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON48180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.88.3e-168105597
       NF-YB   5 drflPianvsrimkkvlP.....anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  ++lP a v r++k  l      a+  + kda     e +  fi ++++ a+d c++ kr+ti+gdd+l al ++ f ++++plk+ l ++r+ ++ek
  PON48180.1   8 AEELPKAIVRRVVKDKLShcshdADFNVHKDALLAFTESARIFIHYLSATANDLCKESKRQTISGDDVLKALEEIEFSEFLKPLKASLDEFRKKNAEK 105
                 5689**********9997222223457999**************************************************************998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MEKAVSEAEE LPKAIVRRVV KDKLSHCSHD ADFNVHKDAL LAFTESARIF IHYLSATAND  60
LCKESKRQTI SGDDVLKALE EIEFSEFLKP LKASLDEFRK KNAEKKKGAS QSKDVKKKRK  120
LEEEPSDKNE GSESRQDEND EDNAEDVTGD D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199120RKKNAEKKKGASQSKDVKKKRK
2100120KKNAEKKKGASQSKDVKKKRK
3105126RKKNAEKKKGASQSKDVKKKRK
4116121KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-44NF-YB family protein