PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48297.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 349aa MW: 39225 Da PI: 6.7198

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.1e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++ +G g+W++ ++ g++R++k+c++rw +yl PON48297.1 15 KGPWTPEEDKKLVDYITAHGHGSWRSLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	55.9	9.5e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++++++ lG++ W++Ia++++ gRt++++k++w++yl PON48297.1 68 RGKFSEEEERIIIHLHSVLGNK-WSRIAAHLP-GRTDNEIKNFWNTYL 113 89******************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRSPCCDEK ADLKKGPWTP EEDKKLVDYI TAHGHGSWRS LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEERIII HLHSVLGNKW SRIAAHLPGR TDNEIKNFWN TYLRKKLLHM 120 GIDPNTHKPR TDLNHLLNLS QLLSSSHLIM NTTSTTISTP LENALKLQAD AAHQYMAKIQ 180 MLQNLMQVMT SNSTISNTAQ NIESINPSTL LGVQNNLHIF EGQIMGYDQI QNLGNIVPVC 240 PNEYSKAIDM NPWASSESGG RTGGGDGVDH QKNSADDEGI HDQNIDQLPR LVSSAPFTGR 300 TSFSNHTENK SDHSAIVHSP TSTVFEDWEK LMDDESSESY WKDIIELTS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRSPCCDEK ADLKKGPWTP EEDKKLVDYI TAHGHGSWRS LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERIII HLHSVLGNKW SRIAAHLPGR TDNEIKNFWN TYLRKKLLHM  120
GIDPNTHKPR TDLNHLLNLS QLLSSSHLIM NTTSTTISTP LENALKLQAD AAHQYMAKIQ  180
MLQNLMQVMT SNSTISNTAQ NIESINPSTL LGVQNNLHIF EGQIMGYDQI QNLGNIVPVC  240
PNEYSKAIDM NPWASSESGG RTGGGDGVDH QKNSADDEGI HDQNIDQLPR LVSSAPFTGR  300
TSFSNHTENK SDHSAIVHSP TSTVFEDWEK LMDDESSESY WKDIIELTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	265	GGRTGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	3e-87	MYB family protein