PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON48542.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family GRAS
Protein Properties Length: 472aa    MW: 52672.7 Da    PI: 6.1417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON48542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.62.5e-45502392185
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlt 97 
                 ++lLl+cA a++ +d + aq++++ l++ as+ gd +qRl++ f++AL +r +r ++    +  + + s+  + ++l++++    ++++ P+++f++ +
  PON48542.1  50 EKLLLHCASALERNDVTFAQQVMWVLNNVASSVGDHNQRLTSWFLRALISRASRLCPASTTTAMSLNGSNGVVHRRLMSVTElagYVDLIPWHRFGYCA 148
                 689***************************************************7666555444444443445555555444599************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakr 185
                  N+ I +a++g ++vHi+Df+i++++QWp+L++aLa+Rpeg+pslRiT+ +   ++    + + ee+g rL +f +  +vpfefnv+  ++
  PON48542.1 149 SNSLIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGSPSLRITVPSFRPPVpplLNVSCEEVGLRLGNFSKFKEVPFEFNVIGINS 239
                 ************************************************98886666779999************************84443 PP
2GRAS141.77.7e-44267463175373
        GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld...esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                 +++f++l    l++++ ++L+++++Eal+Vn++  l +l+d   ++++ +s rd++L++vk+l+P++vvvv++++d+n++s+  r++ +++y +  fd+
  PON48542.1 267 SLQFEFL----LTQINASSLNLQEDEALVVNFQNWLRYLPDgphKDGDYNSLRDTFLNVVKGLNPRIVVVVDEDSDLNTSSLISRIATCFNYLWIPFDA 361
                 6788887....889**********************9999711145556669*********************************************** PP

        GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                 le+ lp+es++ri +E   +g +i+n++  eg++r+er e+  + ++r+++aGF ++p+ e+++k++k+ll +++ ++g++  ee++ lvl+Wk+++ v
  PON48542.1 362 LETFLPKESRQRIEYESD-IGHKIENIIGFEGFQRVERLESGVTLSKRMRNAGFLSIPFAEDTVKEVKALLDEHAsGWGMKR-EEDHMLVLTWKGHNSV 458
                 ******************.********************************************************5555543.6678999********* PP

        GRAS 369 svSaW 373
                 + +aW
  PON48542.1 459 FSTAW 463
                 ***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    
MKTELRGSTT TTSFSLRNPN YNNLFINTPQ GSLAGALRGS LGSLDGACIE KLLLHCASAL  60
ERNDVTFAQQ VMWVLNNVAS SVGDHNQRLT SWFLRALISR ASRLCPASTT TAMSLNGSNG  120
VVHRRLMSVT ELAGYVDLIP WHRFGYCASN SLIFKAIQGY SKVHILDFSI THCMQWPTLI  180
DALAKRPEGS PSLRITVPSF RPPVPPLLNV SCEEVGLRLG NFSKFKEVPF EFNVIGINSA  240
NSCSSSLSET ISSRSCTNIS EEEYSSSLQF EFLLTQINAS SLNLQEDEAL VVNFQNWLRY  300
LPDGPHKDGD YNSLRDTFLN VVKGLNPRIV VVVDEDSDLN TSSLISRIAT CFNYLWIPFD  360
ALETFLPKES RQRIEYESDI GHKIENIIGF EGFQRVERLE SGVTLSKRMR NAGFLSIPFA  420
EDTVKEVKAL LDEHASGWGM KREEDHMLVL TWKGHNSVFS TAWVPNISGL ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-117GRAS family protein