PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48723.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 243aa MW: 27914.1 Da PI: 6.852

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.5	3.3e-36	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+C+++r+kC++ C lapyfpa++ k+++n+h++FG+sn+ ++++a+++++r+++++s++ e++ar +dPv+G++gv+++l++ql+ ++++l ++++ PON48723.1 14 PCAGCRHQRKKCEERCELAPYFPARKFKEYKNAHRVFGTSNIYRIMAAVEPDQRQATADSILLEGNARRSDPVRGCYGVLRTLRSQLSFHEKQLRTVNQ 112 7*********************************************************************************************99998 PP DUF260 100 e 100 + PON48723.1 113 H 113 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MAVSRASDQR VHQPCAGCRH QRKKCEERCE LAPYFPARKF KEYKNAHRVF GTSNIYRIMA 60 AVEPDQRQAT ADSILLEGNA RRSDPVRGCY GVLRTLRSQL SFHEKQLRTV NQHLAYYRER 120 ENNILKRQDL DMKRHPFSIN TSISTTTIMS PSSGPSAQFL HHDDQTSDLD GFRFPQEIVD 180 LSTLEESADL KPFDLELIDQ MMESYNHHED KAFASNAESR KSSTGFNENG TLIVKDEKSA 240 EEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-31	LBD family protein