PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48958.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 1121aa MW: 124851 Da PI: 8.7213

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3e-10	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k e Cr+f+r G C+yG rCkF H+ PON48958.1 4 KKEVCRNFQR-GSCQYGQRCKFLHV 27 889*****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence
MPMKKEVCRN FQRGSCQYGQ RCKFLHVTSQ QQKPPNNIFS YQQQQQQKPN PYGFGVQNNP 60 QPKGAPDFGS KSNQFKQPFE NSWTRSSAHT ARSTSEKQSQ ATNHKCTDPE SCRRLIVEDF 120 EQERPLWRLT CYGHWKNAPC DIVGDISYEE LRAAAYDDAN CGLSLPSIVD RERNLVNSKV 180 LEFENLCKSG STTRITPANQ NTFPVTGPNA FSQNAQGAPA SVSSFSQLGT SLNMGFGPRP 240 PAPLNNPVVQ PNPFGVSGET SSAFGIKDLS SRSQGSTFTP TPFFSNNSFM RAESNPVTTS 300 TVSNQFLGAT NSHSPVPFVG LSFSSNSNGP ATTELQQGEE SSRVDPSVWS RNKWSPGEGR 360 LSLAANLKLL LVSMLSLREE TRVTAIKFCR TCFTYQLGRR KGIDIVLGLR NHMYGYSYLI 420 STHAAQLKNP FILSMLHGRA QRSSFPLLQT TKPKTLFHFL HFSSQSQSQS QSQSQSQSQS 480 RHFPLRSTLS SLAEPLLRED PPETSSYAAV FQFLTGRSFL RLGRQVHAHM ALRSLEPDAF 540 VGAKMIAMYA SSGDLDSAVT TFNRINNPSS LSYNSIIRAY TLCGFPEKTI GIYFRMRSLG 600 LKGDNFTYPF VLKCCADLSN VWMGKCVHGI SLRIGLEIDM YVGTSLIDMY VKCGEISHAH 660 KLFDRMIVRD ISSWNALIAG YMKNGETGVA EDLFERMARK NIVSWTAMIS GYTQNGLAER 720 ALLVFDKMLE EDSGVMPNWV TIMSVLPACA HSAALERGRQ IHKFVSKIGL DSNVSVQTAL 780 VAMYAKCGGL AEASQCFDRI PLEKKNLVAW NTMITAYSSH GRGLESISTF EDMIKAGVQP 840 DAITFTGLLS GCSHSGLADM GLKYFSCMTK AYSVDPEVQH YACVVDLLGR AGRLVEANEL 900 IDKMPMQAGP SVWGALLAAC RKHRNLEIAK FAAKKLFVLE PDNSGNYVLL SNMYAEVGMW 960 KEVDNLRAML KSQGMRKTPG CSWIEVNGKA HMFLGGDTSH PQAKEIYVFL EALPEKIKEV 1020 GYVPDTSLVL HDVSDEEKEH NLTTHSEKLA IAFGLLNTSR DVVLRVTKNL RICVDCHTAT 1080 KFISKIYRRE IILHRFCHKE DWDQYLEEKR DWISQKPQFT S

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence

MPMKKEVCRN FQRGSCQYGQ RCKFLHVTSQ QQKPPNNIFS YQQQQQQKPN PYGFGVQNNP  60
QPKGAPDFGS KSNQFKQPFE NSWTRSSAHT ARSTSEKQSQ ATNHKCTDPE SCRRLIVEDF  120
EQERPLWRLT CYGHWKNAPC DIVGDISYEE LRAAAYDDAN CGLSLPSIVD RERNLVNSKV  180
LEFENLCKSG STTRITPANQ NTFPVTGPNA FSQNAQGAPA SVSSFSQLGT SLNMGFGPRP  240
PAPLNNPVVQ PNPFGVSGET SSAFGIKDLS SRSQGSTFTP TPFFSNNSFM RAESNPVTTS  300
TVSNQFLGAT NSHSPVPFVG LSFSSNSNGP ATTELQQGEE SSRVDPSVWS RNKWSPGEGR  360
LSLAANLKLL LVSMLSLREE TRVTAIKFCR TCFTYQLGRR KGIDIVLGLR NHMYGYSYLI  420
STHAAQLKNP FILSMLHGRA QRSSFPLLQT TKPKTLFHFL HFSSQSQSQS QSQSQSQSQS  480
RHFPLRSTLS SLAEPLLRED PPETSSYAAV FQFLTGRSFL RLGRQVHAHM ALRSLEPDAF  540
VGAKMIAMYA SSGDLDSAVT TFNRINNPSS LSYNSIIRAY TLCGFPEKTI GIYFRMRSLG  600
LKGDNFTYPF VLKCCADLSN VWMGKCVHGI SLRIGLEIDM YVGTSLIDMY VKCGEISHAH  660
KLFDRMIVRD ISSWNALIAG YMKNGETGVA EDLFERMARK NIVSWTAMIS GYTQNGLAER  720
ALLVFDKMLE EDSGVMPNWV TIMSVLPACA HSAALERGRQ IHKFVSKIGL DSNVSVQTAL  780
VAMYAKCGGL AEASQCFDRI PLEKKNLVAW NTMITAYSSH GRGLESISTF EDMIKAGVQP  840
DAITFTGLLS GCSHSGLADM GLKYFSCMTK AYSVDPEVQH YACVVDLLGR AGRLVEANEL  900
IDKMPMQAGP SVWGALLAAC RKHRNLEIAK FAAKKLFVLE PDNSGNYVLL SNMYAEVGMW  960
KEVDNLRAML KSQGMRKTPG CSWIEVNGKA HMFLGGDTSH PQAKEIYVFL EALPEKIKEV  1020
GYVPDTSLVL HDVSDEEKEH NLTTHSEKLA IAFGLLNTSR DVVLRVTKNL RICVDCHTAT  1080
KFISKIYRRE IILHRFCHKE DWDQYLEEKR DWISQKPQFT S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	3e-62	C3H family protein