PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON49219.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 261aa    MW: 29192.3 Da    PI: 7.291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON49219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.1e-161155347
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                i+++  r +tf +R++g+ KKA+E S+LCd ev++ + +++  l+
  PON49219.1 11 IKEEKSRLTTFQRRKKGLVKKASEFSTLCDSEVCLFVSAPQSDLK 55
                889999*******************************99988775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGRGKVKLEL IKEEKSRLTT FQRRKKGLVK KASEFSTLCD SEVCLFVSAP QSDLKVVSAS  60
GIETFPPESD RVLGVVEKYK KAVMQRPPKC KSYHPTGPPL AKPNRNKYCD SKYPTLSELV  120
DGFSADELSE LVSRLDRKIE IVKKVIEGKK EENAPDPMIM IRNDGVIHNH MDDQQLHDIV  180
YDDDDDDSDF VRAEAMLDHQ NMTSNNAQFR GQECMMMLSG AATAAPSPNS LAHPHNAVHA  240
VPLPHECGAQ YLLIPKRGRP H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.17e-14MIKC_MADS family protein