PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON49474.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 358aa MW: 40570 Da PI: 7.5005

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON49474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.4e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ ++ +G g+W+++++ g+ R++k+c++rw +yl PON49474.1 13 RGLWSPEEDDKLIRHITTHGHGSWSAVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	56.5	6.3e-18	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ PON49474.1 66 KGSFTEEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MGHRCCNKQK VKRGLWSPEE DDKLIRHITT HGHGSWSAVP KLAGLQRCGK SCRLRWINYL 60 RPDLRKGSFT EEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPQTHNLMSS SHREIKGPTN KNITSFVVSQ NRNHIKQSTS SSIFSANSHE TITNNSSNIS 180 YPHNNSILTL PNSQTTAIST FNNQYQNPGS SNRTSTIVTS TSGAAWNLKA QNPSQNDHIT 240 PNITSPYISS FSLSGNVQDL SRPGLWDEFG ILDSSFDLSE VLPRIISEGE QQSLQGQNHD 300 HDHRTLQDHE QEKIWEMEID KVGNYSNFDH GFMESTLNIS GVMCHNLGSM EYDLAWNY

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MGHRCCNKQK VKRGLWSPEE DDKLIRHITT HGHGSWSAVP KLAGLQRCGK SCRLRWINYL  60
RPDLRKGSFT EEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPQTHNLMSS SHREIKGPTN KNITSFVVSQ NRNHIKQSTS SSIFSANSHE TITNNSSNIS  180
YPHNNSILTL PNSQTTAIST FNNQYQNPGS SNRTSTIVTS TSGAAWNLKA QNPSQNDHIT  240
PNITSPYISS FSLSGNVQDL SRPGLWDEFG ILDSSFDLSE VLPRIISEGE QQSLQGQNHD  300
HDHRTLQDHE QEKIWEMEID KVGNYSNFDH GFMESTLNIS GVMCHNLGSM EYDLAWNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	3e-88	MYB family protein