PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON49518.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 416aa MW: 45815.2 Da PI: 6.893

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON49518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.2	1.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lvd+++++G g+W++ ++ g++R++k+c++rw +yl PON49518.1 14 KGPWTPEEDEKLVDYIRRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.2	6.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l++++++ lG++ W+tIa +++ gRt++++k+ w+++l PON49518.1 67 RGKFSEEEEKLIINLHAVLGNK-WSTIAGHLP-GRTDNEIKNLWNTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGRPPSSDEN GLKKGPWTPE EDEKLVDYIR RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEKLIIN LHAVLGNKWS TIAGHLPGRT DNEIKNLWNT HLKKKLLQMG 120 IDPVTHRPRT DLNILSNLPQ LIAAANFAST FLSHPTMWDT TTTAAHSTLT AALQPPDAAK 180 IQLLHHILQV LGTGTTPSTS TSTPTMEAML NLLGLSSISP DHQPYILDEY LRLVEHSRMQ 240 GYSINGPVGG FASQINPTHI QTSSTTTTTS TFPNIEAPRH HHQQPVSMDN STYPSISSSK 300 LDSTNHKNTN IMSMVDISGY KSTNSSASPT NCDQLPLLVS ASPDDHHHDM ISSSVANKNP 360 SNKANPNHDI ISSNPSSATS TTFEAWGDLI DDETTDSYWK DIMDLASSQT LVNLVD

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGRPPSSDEN GLKKGPWTPE EDEKLVDYIR RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEKLIIN LHAVLGNKWS TIAGHLPGRT DNEIKNLWNT HLKKKLLQMG  120
IDPVTHRPRT DLNILSNLPQ LIAAANFAST FLSHPTMWDT TTTAAHSTLT AALQPPDAAK  180
IQLLHHILQV LGTGTTPSTS TSTPTMEAML NLLGLSSISP DHQPYILDEY LRLVEHSRMQ  240
GYSINGPVGG FASQINPTHI QTSSTTTTTS TFPNIEAPRH HHQQPVSMDN STYPSISSSK  300
LDSTNHKNTN IMSMVDISGY KSTNSSASPT NCDQLPLLVS ASPDDHHHDM ISSSVANKNP  360
SNKANPNHDI ISSNPSSATS TTFEAWGDLI DDETTDSYWK DIMDLASSQT LVNLVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-92	MYB family protein