PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON50474.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 599aa MW: 66970.8 Da PI: 7.6609

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON50474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	4e-06	305	325	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC f+ +G C++G++C+F H PON50474.1 305 LCFKFLSSGSCPRGEKCHFQH 325 78889999************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MAPPRILLCG DVLGRLNQLF KRVASVNKSA GPFDALLCVG QFFPDSPERL GEFTDYIEGR 60 SEIPIATYVI GDYGIGAQKV LLAASRESGN QGFKMDGLKI CDNLYWLKGS GKFTLHGLLV 120 AYLSGRHSSV GQQFGTYSQD DVDALRAIAE EPGIVDIFLT YPFMTDVPPG ISESSGTDST 180 VVELVSEIKP RYHIAGTKGV FYAREPYSNV DAVHVTRFFG LAPVGNKDKQ KFIHAISPTP 240 ASMMSTAEIS MKSANTTLSP YTVQKTVDGK EASKRTNDSV TDSQYWRYDV STKRQKHGAG 300 DGDKLCFKFL SSGSCPRGEK CHFQHYMAAR EQYMRGVCFD FLNKGKCERG PDCNFKHSLQ 360 DEGEGKSHRR RGSENASTNR SKECWFCISS PNVESHLIIS IGENFYCALA KGPLVKGHVL 420 VIPVEHLPNT ITLLQKCEIE LVRFQSNLKK YYKNQGKEVV FFEWVSKRSS HANLQAIPVP 480 SSKAAALQNI FNFAAEKLGF KFAAMKFDNN SDGRNYLRTQ FDENLSFFYA ELPDGTTLAH 540 VVEETERFPA QFGREVLAGL LDMAKRADWR NCTYSKEEET KMAGDFKSQF QEFDPNEYF

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MAPPRILLCG DVLGRLNQLF KRVASVNKSA GPFDALLCVG QFFPDSPERL GEFTDYIEGR  60
SEIPIATYVI GDYGIGAQKV LLAASRESGN QGFKMDGLKI CDNLYWLKGS GKFTLHGLLV  120
AYLSGRHSSV GQQFGTYSQD DVDALRAIAE EPGIVDIFLT YPFMTDVPPG ISESSGTDST  180
VVELVSEIKP RYHIAGTKGV FYAREPYSNV DAVHVTRFFG LAPVGNKDKQ KFIHAISPTP  240
ASMMSTAEIS MKSANTTLSP YTVQKTVDGK EASKRTNDSV TDSQYWRYDV STKRQKHGAG  300
DGDKLCFKFL SSGSCPRGEK CHFQHYMAAR EQYMRGVCFD FLNKGKCERG PDCNFKHSLQ  360
DEGEGKSHRR RGSENASTNR SKECWFCISS PNVESHLIIS IGENFYCALA KGPLVKGHVL  420
VIPVEHLPNT ITLLQKCEIE LVRFQSNLKK YYKNQGKEVV FFEWVSKRSS HANLQAIPVP  480
SSKAAALQNI FNFAAEKLGF KFAAMKFDNN SDGRNYLRTQ FDENLSFFYA ELPDGTTLAH  540
VVEETERFPA QFGREVLAGL LDMAKRADWR NCTYSKEEET KMAGDFKSQF QEFDPNEYF