PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50689.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25491.9 Da    PI: 8.2456
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-191564150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                kri+++s+rqvtfskR+ g++ KA EL +L++aev  i+fs+++k+y + 
  PON50689.1 15 KRINEESKRQVTFSKRKLGLFNKAAELNILTGAEVVAIVFSQHQKIYSFV 64
                79*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MVKVITKGRQ KVEIKRINEE SKRQVTFSKR KLGLFNKAAE LNILTGAEVV AIVFSQHQKI  60
YSFVSPGSDY LIKSYRNWGT APSNDIINYA PQEHIDHHGL GHGYHNLEAE VNFLEEKNKL  120
VLKNRIDMEA NGEREGFWWN HPHENMDFEE AKRFRDALLG FNEMVEKKVK EMTMMTKQPA  180
KNYFPSSNEG ESEACFGQPW ARGGNNPTFV HGDMSGVKCF LP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-19M-type_MADS family protein