PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50793.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24750.2 Da    PI: 8.2465
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.1e-193381149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie++  r +tfskRr gi KKA+EL +LC+aev ++ifs++gk + y
  PON50793.1 33 KMIEDEDDRLITFSKRRSGIYKKASELVTLCGAEVGLVIFSPSGKPFSY 81
                679*****************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MEANNTNTTT TTTTTNNNNI VKKTKGRQKT QMKMIEDEDD RLITFSKRRS GIYKKASELV  60
TLCGAEVGLV IFSPSGKPFS YGHPSIESVA NDILLSGTNA AGAASVDAAT HPIFEAHRRL  120
RINELNQQYN DLFGHLETEK ERRREVEKMT EEAAKEAPEG WWDSPIEGLS LDELKQRLRD  180
QTHLCTQLSI RVLLAFLIKL LLPIFRVLAM AITNNKISIH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-31M-type_MADS family protein