PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50795.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 210aa    MW: 24077.2 Da    PI: 9.3465
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.2e-162875249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 i ++  r +tfskR+ gi KKA+EL +LC+ ev  +ifs++gk + y
  PON50795.1 28 MIWDENDRLITFSKRKSGIYKKANELVTLCGGEVGFVIFSPSGKPFSY 75
                567788999**********************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MEANTTANHN QKPNKKQTKG KQKIEMKMIW DENDRLITFS KRKSGIYKKA NELVTLCGGE  60
VGFVIFSPSG KPFSYGHPSI DSVAERLLLD QTTEVTMTEV TTHPIMEAHR QMRINNLNQK  120
YNDLYSHMEA EKERQQSLQK MQIEASDELW EGSIEGLSLE ELKQRQRSLE ELHANISNHV  180
KERMTKSLNI FNNKNKNVST PAATPRSSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-27M-type_MADS family protein