PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50797.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32210.8 Da    PI: 10.0338
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.5e-183179149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++  r +tfskRr gi KKA+EL +LC+aev v+ifs++gk + y
  PON50797.1 31 KMIQDEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPSGKPFSY 79
                57999999************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MAANVNNNNT TTTNNNNKNK KTKGRQKIEM KMIQDEDDRL ITFSKRRSGI YKKASELVTL  60
CGAEVGVVIF SPSGKPFSYG HPSIDAVSHR LLSNQPNLQP LPHTAAVVDT ATHPIVEAHR  120
RLRMSKLNQQ YNDMFGHLEA EKGRMKEMEK VTVGEIEKVA VAPKGWWDAP IEGLSLDELK  180
QKQRSLEELH ANISNHVKGR ITMSLSSFIN NNNNNSSNNN NNNNNNNNNI ALAPRASSSF  240
YARSIRGSSS SQRAEPFVYR PSTNGLNHPL SEHGHGYGHG YGDDLGPNQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-33M-type_MADS family protein