PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50799.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 271aa    MW: 30305.7 Da    PI: 9.4053
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.58.3e-192876149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++  r +tfskRr+gi KKA+EL +LC+aev v+ifs++gk + y
  PON50799.1 28 KMIQDEDDRLITFSKRRAGIYKKASELVTLCGAEVGVVIFSPSGKPFSY 76
                57999999************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MAANNTTNNN NNKKKNKKTK GRQKIEMKMI QDEDDRLITF SKRRAGIYKK ASELVTLCGA  60
EVGVVIFSPS GKPFSYGHPS IDAVSHRLHS DQPNPPPLPH AAAVDAATQP ILEAHRRVRM  120
NKLNNQYNEL FSHLEAEKER RKEMEKLTAA ETEKAAATPE GWWDAPIEGL SFDELKRRHR  180
SLEELHANIS NHVKERMDMS LGSFNNNNNN NALAPGASSS FYASIGGSSS SQRPEPFVYR  240
PTTSTGLHYP HSEYGYGYGH GHRDDLGPNQ Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-30M-type_MADS family protein