PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50871.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YB
Protein Properties Length: 233aa    MW: 25439.4 Da    PI: 6.6308
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.85.6e-5723118297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+kyre+egek
  PON50871.1  23 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYREVEGEK 118
                 89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSTKRNQTTS PIGSPLSPDN STKEQDRFLP IANVSRIMKK SLPANAKISK EAKETVQECV  60
SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFENY VGPLKVYLNK YREVEGEKNT  120
MARQEDHSPT NTPPISNHGV HDMVNRAAAA NSAPNKVDFQ DFNGGGFYSL GGQMGGPKSY  180
DEMSGMVIGY GDNYVSGGYN VNGMNMIHES GGDHGNPNMV MAAAQLHHGN IGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-67NF-YB family protein