PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON51238.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 477aa MW: 51500.9 Da PI: 8.1973

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON51238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	2e-11	144	168	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+C+F H+ PON51238.1 144 GEKDCAHYMQTRTCKFGDSCRFDHP 168 7889********************8 PP
2	zf-CCCH	34.1	4.5e-11	196	220	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+G rCkF+H++ PON51238.1 196 LPDCPYFLKTQRCKFGLRCKFNHPK 220 689********************96 PP
3	zf-CCCH	39.5	9.7e-13	243	267	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tGtCk+G++CkF+H++ PON51238.1 243 EPPCAFYLKTGTCKFGSTCKFNHPK 267 79*********************96 PP
4	zf-CCCH	36.2	9.9e-12	319	344	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ PON51238.1 319 PGEPDCPFYLKTGSCKYGITCRYSHP 344 5789*********************9 PP
5	zf-CCCH	40.9	3.4e-13	407	428	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+++tG+Ck+G+rCkF+H+ PON51238.1 407 ECDFYMKTGECKFGERCKFNHP 428 7********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MAGHLYGFGA AQSSAAAASA TTSLYAATEP YYPDSLASDP HRAAAAAAMY LGQADALGAY 60 AAASRTNSHL VSLASWTAAT AGAAATEDPV TGIKRSSEAL YHPTVLGAHN TLGQSEAWYS 120 ANALAKRFRF ENASNLPIYP QRPGEKDCAH YMQTRTCKFG DSCRFDHPIW VPEGGIPDWK 180 EVALVASDDL PERPGLPDCP YFLKTQRCKF GLRCKFNHPK DHLAAAVASE NGDASALPER 240 PSEPPCAFYL KTGTCKFGST CKFNHPKDID VPSAGQENGS SQYEAVKMEG TTGDAKHVKS 300 SESFTPALYY NTKELPIRPG EPDCPFYLKT GSCKYGITCR YSHPDRNAIN PPAAALSHAF 360 VASPAAGLNI GVVNPVASLY QTIDPRLAQA TVGVGPTVYP QRPGQMECDF YMKTGECKFG 420 ERCKFNHPID RSAPTLATIQ AQQQSVKLTL AGLPRREVCD TKSRNCSKYS KQFKRKD

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MAGHLYGFGA AQSSAAAASA TTSLYAATEP YYPDSLASDP HRAAAAAAMY LGQADALGAY  60
AAASRTNSHL VSLASWTAAT AGAAATEDPV TGIKRSSEAL YHPTVLGAHN TLGQSEAWYS  120
ANALAKRFRF ENASNLPIYP QRPGEKDCAH YMQTRTCKFG DSCRFDHPIW VPEGGIPDWK  180
EVALVASDDL PERPGLPDCP YFLKTQRCKF GLRCKFNHPK DHLAAAVASE NGDASALPER  240
PSEPPCAFYL KTGTCKFGST CKFNHPKDID VPSAGQENGS SQYEAVKMEG TTGDAKHVKS  300
SESFTPALYY NTKELPIRPG EPDCPFYLKT GSCKYGITCR YSHPDRNAIN PPAAALSHAF  360
VASPAAGLNI GVVNPVASLY QTIDPRLAQA TVGVGPTVYP QRPGQMECDF YMKTGECKFG  420
ERCKFNHPID RSAPTLATIQ AQQQSVKLTL AGLPRREVCD TKSRNCSKYS KQFKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-168	C3H family protein