PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON51997.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MIKC_MADS

Protein Properties

Length: 229aa MW: 25938.5 Da PI: 9.9774

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON51997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.4	8.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+g++KKA ELS+LCd +v+++i+s tgkl+ey+s PON51997.1 9 KRIENATNRQVTYSKRRKGLFKKADELSILCDSKVSLLILSGTGKLHEYIS 59 79***********************************************86 PP
2	K-box	82	1.3e-27	71	165	1	95
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+++g +l++a++e +q++l+kLk+++++L+r++R++ Ge++++L++ eL L q++e +++ +R++K++++ +qi+++ kk k+++++n+aL PON51997.1 71 YQRTTGIDLWSAQYEGMQENLKKLKEKNRSLRRQIRQRRGEGVDNLDFGELLALDQEMEAAVQLVRERKYKVMSNQIDTTNKKLKQAKQINRALL 165 78899999************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MARGKIQIKR IENATNRQVT YSKRRKGLFK KADELSILCD SKVSLLILSG TGKLHEYISP 60 STTTKQVIDQ YQRTTGIDLW SAQYEGMQEN LKKLKEKNRS LRRQIRQRRG EGVDNLDFGE 120 LLALDQEMEA AVQLVRERKY KVMSNQIDTT NKKLKQAKQI NRALLTDGIN DDSDYGLVDA 180 GGDYDSVTGY SNGIPGVFAL RLQPNQPTLH NDAESVLTSC LSSNWRVKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	109	LKKLKEKNRSLRRQIRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-74	MIKC_MADS family protein