PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52000.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

SRS

Protein Properties

Length: 370aa MW: 39838.6 Da PI: 7.7573

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.8	6.8e-69	143	298	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkele 101 g ++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla +++++ ++ ++skr+r+ ++++ +a ++++++++ +++++ PON52000.1 143 GCMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAGLQQQDHQQFrVVDNSKRQRDAQAAALAACTTATTTTTRLPNNTS 241 679**************************************************99988777656788888888855554444444444444444444 PP DUF702 102 tss....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +P+ev+s+avfrcv+vs++dd++e++aYqta +igGh+fkGiLydqG+e+ PON52000.1 242 GLElggaFPAEVNSPAVFRCVKVSAMDDADENYAYQTALNIGGHLFKGILYDQGPEA 298 3336666**********************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MAGFFCLGGS RDHHPHPHPR SVPSKQEDQK DQAERESNLF LFRSADSEIC TTTTNNNNNN 60 NNKGNSSSSF EIWPHHHHHH HHNHQHPQNF NNYVLSFGST SPSSRANNIR NLNDVDSDDP 120 TRLGFTVMRP GGLGIGGGGG GGGCMNCQDC GNQAKKDCSH LRCRTCCKSR GFQCQTHVKS 180 TWVPAAKRRE RQQQLAGLQQ QDHQQFRVVD NSKRQRDAQA AALAACTTAT TTTTRLPNNT 240 SGLELGGAFP AEVNSPAVFR CVKVSAMDDA DENYAYQTAL NIGGHLFKGI LYDQGPEAHY 300 TGGEGSSSGR GGGSTGEDGG QQLNLITAAT TAATSTAAGN TSISLLDPSM YPTPLNAFMA 360 GTQFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MAGFFCLGGS RDHHPHPHPR SVPSKQEDQK DQAERESNLF LFRSADSEIC TTTTNNNNNN  60
NNKGNSSSSF EIWPHHHHHH HHNHQHPQNF NNYVLSFGST SPSSRANNIR NLNDVDSDDP  120
TRLGFTVMRP GGLGIGGGGG GGGCMNCQDC GNQAKKDCSH LRCRTCCKSR GFQCQTHVKS  180
TWVPAAKRRE RQQQLAGLQQ QDHQQFRVVD NSKRQRDAQA AALAACTTAT TTTTRLPNNT  240
SGLELGGAFP AEVNSPAVFR CVKVSAMDDA DENYAYQTAL NIGGHLFKGI LYDQGPEAHY  300
TGGEGSSSGR GGGSTGEDGG QQLNLITAAT TAATSTAAGN TSISLLDPSM YPTPLNAFMA  360
GTQFFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	7e-64	SRS family protein