PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON52559.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 298aa    MW: 33449.2 Da    PI: 6.1755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON52559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
       PON52559.1  9 KGPWTEQEDFKLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding54.33.1e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
       PON52559.1  62 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MVLQEEIRKG PWTEQEDFKL VCFVGLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL  60
KRGKMTPQEE RLVLELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQEKKRSSSS  120
SPSPSPPSSS SAAVSSPSQS SSSSNITTVE ALPFQDSTTG VESFYDTGGL VVSGDHDEVK  180
GETEEKKHED HEQGCYSMDD IWKEISLPEV NDIGPFYGQQ GGYNCGDLGP CPLIEAAAPP  240
SPAMWDHYYC SDSLWKNNIL DEEVTKTFFS SPTATTAIID NQFNYAARFE YGGASLTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-78MYB family protein