PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON53897.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29008.8 Da    PI: 6.9212
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON53897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.3e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ien   rqvtf+kRrng++KKA+ELSvLCdaev viifsstg+ly++ss
  PON53897.1 10 KIENLNSRQVTFCKRRNGLFKKAQELSVLCDAEVGVIIFSSTGRLYDFSS 59
                69**********************************************96 PP
2K-box58.13.8e-209917920100
       K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + + + +e+++L+ +  +++G++L+ Ls+k+Lq++e++L ++l +i++kK++llleq++++  +e+++  en++Lrk++ee
  PON53897.1  99 DEKDVMDETQMLRLTCMRMMGKELDGLSFKDLQHMEDKLTEGLLSIKDKKEQLLLEQVKKSTLREQKAMMENENLRKEIEE 179
                 44568899*****999**************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGKIEIRK IENLNSRQVT FCKRRNGLFK KAQELSVLCD AEVGVIIFSS TGRLYDFSST  60
RMDDILSRYN RGPGCLSNNL EPSPDLDATN SEKSPPEHDE KDVMDETQML RLTCMRMMGK  120
ELDGLSFKDL QHMEDKLTEG LLSIKDKKEQ LLLEQVKKST LREQKAMMEN ENLRKEIEEV  180
RRNYITPILS SHPLERRVTT KSTKANTDQP NSVSEESEHS DASLQLRLSS CFGPKRKAAR  240
IESASYDSAS QVASE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-55MIKC_MADS family protein