PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54277.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

LBD

Protein Properties

Length: 196aa MW: 21422.4 Da PI: 7.7906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.7	4.4e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C + Cvl+ ++ p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++++++e+ PON54277.1 2 SCNGCRVLRKGCGETCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCHAAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l PON54277.1 101 VLS 103 875 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MSCNGCRVLR KGCGETCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCHAAVET VLSGGALRPI QGVLTPKLDE 120 SSAAASETSW PSHYFPSLPS INDPKQELYS GGRGSSFPII EKFRRDSISL SSEESVMTKS 180 FGIDDRKERK LLNLFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	167	EKFRRDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-65	LBD family protein