PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54533.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 993aa MW: 111706 Da PI: 4.9817

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l PON54533.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l PON54533.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RAVDQPKFPT 240 TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDRELEDI AKLGYASDLA GSEELAEGSA AARALLANYD QTPRRGNTSF RTPQRTPAGK 360 GDAIMMEAEN LARLSQSQTP LLGGENPELH PSDFSGVTPK KKEIQTPNAM LTPSATPGGP 420 GLTPRIGMTP SRDGYSFGMT PRGTPIRDEL RINEDMDMHD STRLELRRQA ELKGNVRSGF 480 SNLAPPQNEY QVLMQQPVPE DDDVPETITE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ 540 RELPRPPAAS LELIRNSLMR ADGDKSSFVP PTLIEQADEM IRKELLTLLE HDNAKYPLNE 600 KANKEKKKGA RRSANGSAVS IPEIEEFEEA ELKEADDFIK EEAAFLRVAM GHENESLDEF 660 VDAHKTCLND LIYFPTRNAY GLSSVAGNME KLAALQNEFE NVRKNLEDDI KKAANLEKKA 720 KILTDGYELR AKKSLWPQIE ETFKQMDTAA KELECFQALQ KQEQLAASHR INNIWEEVKK 780 QKELEQTLQK KYGDLLVELE RTRHQMDEYR VQAQRQEEIA ANKPELELAE SAANQSAAQS 840 TDDSGPIPAL DELGSSMPID PSHDETADQQ TDSIKKHAQS PSLEDQIPPA ADGKLLTLVQ 900 GNSYEAPDGQ LHRPDGLGDG SSEVVAGENE MANKSVDEVA NDNVTTIEIA KEYHDVKNQP 960 NMTEQESSIQ ETAVNDGFVD GDAKEVSGRG EEM

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RAVDQPKFPT  240
TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDRELEDI AKLGYASDLA GSEELAEGSA AARALLANYD QTPRRGNTSF RTPQRTPAGK  360
GDAIMMEAEN LARLSQSQTP LLGGENPELH PSDFSGVTPK KKEIQTPNAM LTPSATPGGP  420
GLTPRIGMTP SRDGYSFGMT PRGTPIRDEL RINEDMDMHD STRLELRRQA ELKGNVRSGF  480
SNLAPPQNEY QVLMQQPVPE DDDVPETITE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ  540
RELPRPPAAS LELIRNSLMR ADGDKSSFVP PTLIEQADEM IRKELLTLLE HDNAKYPLNE  600
KANKEKKKGA RRSANGSAVS IPEIEEFEEA ELKEADDFIK EEAAFLRVAM GHENESLDEF  660
VDAHKTCLND LIYFPTRNAY GLSSVAGNME KLAALQNEFE NVRKNLEDDI KKAANLEKKA  720
KILTDGYELR AKKSLWPQIE ETFKQMDTAA KELECFQALQ KQEQLAASHR INNIWEEVKK  780
QKELEQTLQK KYGDLLVELE RTRHQMDEYR VQAQRQEEIA ANKPELELAE SAANQSAAQS  840
TDDSGPIPAL DELGSSMPID PSHDETADQQ TDSIKKHAQS PSLEDQIPPA ADGKLLTLVQ  900
GNSYEAPDGQ LHRPDGLGDG SSEVVAGENE MANKSVDEVA NDNVTTIEIA KEYHDVKNQP  960
NMTEQESSIQ ETAVNDGFVD GDAKEVSGRG EEM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein