PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54645.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29057.8 Da    PI: 10.0872
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-312473150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  PON54645.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                79***********************************************8 PP
2K-box103.42.9e-34911883100
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +s++ s++ea+a+ +qqe+akL+ +ie+Lq+ +R llG+ ++s + +eL+ Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  PON54645.1  91 SSNTGSVSEANAQFYQQEAAKLRTQIESLQKGIRELLGDTVSSANTRELKGLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 188
                 3344449****************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MAYQNKSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANQSVKST IERYKKTSSD SSNTGSVSEA NAQFYQQEAA KLRTQIESLQ  120
KGIRELLGDT VSSANTRELK GLETKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAENE RNQNMSLNMA GGGNYELMQQ QQSHEQQQQP AAAFDSRNYF QVNALQPNHH  240
QYQRQDPMAL QLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-113MIKC_MADS family protein