PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54811.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 270aa MW: 30644.2 Da PI: 6.501

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.6e-39	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC+kdC+l p fpa+qp+kf+++h+lFG++n+ ++lk+++++ ++dam+s+++e+ +rar Pv+G++g+i++lq qleq +el l+++ PON54811.1 10 ACAACKYQRRKCSKDCPLGPFFPADQPEKFQYAHRLFGVRNINNILKQVSPQYKQDAMTSIIFESAMRARFPVHGCLGIIKQLQTQLEQNLEELRLVHT 108 7*********************************************************************************************99987 PP DUF260 100 e 100 + PON54811.1 109 S 109 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MTIKGGASQA CAACKYQRRK CSKDCPLGPF FPADQPEKFQ YAHRLFGVRN INNILKQVSP 60 QYKQDAMTSI IFESAMRARF PVHGCLGIIK QLQTQLEQNL EELRLVHTSL AICKDQYQQQ 120 QIQYSSNDDV PIQQHIHHQF NSASLPMFSN YESLPVFSNH GSLTEGINNS IYISGDQGHH 180 EYFAKPITIQ NPSSNDVEPA LQQTQLQYPS QQEVDVSYYG DIPFGTIVDD RQSFIESKEP 240 CESSAESSLK KAIQMKNEHS STEHHQKNEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-37	LBD family protein