PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54966.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27930.9 Da    PI: 8.9878
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  PON54966.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box921.1e-30861741199
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ea + s+qqe+ kLk+++e+L r++R+l+Ge+L+ Ls keL++Le+qL+ slk+iRs++++ +l+q+ +lq+ke+ l+e+nk+L++kl 
  PON54966.1  86 EALELSSQQEYLKLKARYETLLRNHRNLMGEELGALSSKELESLERQLDMSLKQIRSTRTQCMLDQLTDLQRKEHLLNETNKTLKQKLV 174
                 4555689*******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKSNYGAPEP NVSTREALEL SSQQEYLKLK ARYETLLRNH RNLMGEELGA  120
LSSKELESLE RQLDMSLKQI RSTRTQCMLD QLTDLQRKEH LLNETNKTLK QKLVEGYQLS  180
SLQLNPSGAD DVGYGRQPPQ PQGDVFYHPL ELEPTLQIGY QADSTISVVT AGPSMNNYMP  240
VGWLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-121MIKC_MADS family protein