PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54968.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 75aa    MW: 8543.03 Da    PI: 10.905
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krie+ks rqvtfskRrng++KKA ELSvLCd++va+iifss+g+lye++
  PON54968.1  9 KRIEDKSSRQVTFSKRRNGLIKKARELSVLCDIDVALIIFSSRGRLYEFA 58
                79***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    
MGRKKVELKR IEDKSSRQVT FSKRRNGLIK KARELSVLCD IDVALIIFSS RGRLYEFANG  60
TEPSRIEQLL GMGMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.29e-30MIKC_MADS family protein