PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54980.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 227aa    MW: 26239.6 Da    PI: 8.2762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.2e-191463150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                kri+++ +rqvtfskR+ g++ KA EL +L++aev  i+fs+++k+y + 
  PON54980.1 14 KRINEENKRQVTFSKRKLGLFNKAAELNILTGAEVVAIVFSQHQKIYSFV 63
                79*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MVKVTKGRQK VEIKRINEEN KRQVTFSKRK LGLFNKAAEL NILTGAEVVA IVFSQHQKIY  60
SFVSPGSDYL IKSYRNWGTA PNNDIINYAP QDQHIDHHHH HHHGLGHGYH NLEAEVNFLE  120
EKNKLALKNR IDMEANGERE GFWWNRPHEN MDFEEAKRFR DALLGFNEMV EKKVKEMTMM  180
TKQPANNYFP SSNEAESEAC FGQPWSRGGN NPTFVHGDMS GVKCFLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-22M-type_MADS family protein