PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON55161.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24059.4 Da    PI: 9.6859
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON55161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.7e-221861245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +i+nk n qvtfskRr g++KKA+EL++LC++e+a+i fs+  k
  PON55161.1 18 KIQNKNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIAFSPAEK 61
                599*************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MVKNPMISKG HKKIEMVKIQ NKNNLQVTFS KRRSGLFKKA SELCTLCGVE IAIIAFSPAE  60
KPFSFGHTEF GAIVNRFLTN QNHYSSLSSN ISSTSTTNSY GQLHQNSDHV VHELNAQLSR  120
LLSELEAEKK KGRELDEMRK AGQRMWWWES AIDELMSLDE LKQFKASLEE LKNNVVLTRQ  180
AHTMLNNVFE VKPNDFSTNK FYNFGSGHGV F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-49M-type_MADS family protein